rs281766 chr2:199955782 T>G
- Sequence
ccatacagcaccggcaggcaccgg[T/G]gtgaagggtcataaaaatggcgct
- ASB in cell types
- HEK293 (embryonic kidney) CD14+ monocytes breast tumor Th1-cells
- ASB for transcription factors
- STAT1_HUMAN ESR1_HUMAN ZNF18_HUMAN CDK8_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | n/a | 3.56 | 2.00 | n/a | No Hit | |||
| ESR1_HUMAN | 0.64 | 3.23 | 2.00 | n/a | No Hit | |||
| ZNF18_HUMAN | 2.93 | -2.72 | 1.00 | -4.85 | Concordant | |||
| CDK8_HUMAN | -0.19 | 1.57 | 1.00 | n/a | n/a | |||
| TBX21_HUMAN | 1.71 | -0.98 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood