rs283122 chr5:32093457 T>C

Sequence
tagtcccgccgttgccctgaaata[T/C]ggtggacccctgaacaacatgagg
ASB in cell types
K562 (myelogenous leukemia) foreskin keratinocyte 22RV1 (prostate carcinoma)
ASB for transcription factors
CTCF_HUMAN ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.59 0.49 4.1·10-31.00 1.47 n/a No Hit
ANDR_HUMAN 2.08 -0.96 0.021.00 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP barnes akathisia rating scale,  college completion,  diabetic retinopathy in type 2 diabetes mellitus,  diastolic blood pressure (dbp),  fasting blood glucose,  hdl cholesterol,  resistance to kuru in aged women despite likely exposure,  rheumatoid arthritis,  triglycerides

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