rs28325 chr5:179870733 A>C
- Sequence
agtccttggcagcctgcagggggc[A/C]gagctggtctgctggccccagaga
- ASB in cell types
- IPSC-derived bipolar neuron GM12878 (female B-cells lymphoblastoid cell line) neural progenitors GM23338
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN PRDM9_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.82 | 0.98 | 1.32 | -3.83 | Concordant | |||
| STAG1_HUMAN | 3.39 | -3.73 | 1.00 | n/a | n/a | |||
| RAD21_HUMAN | 1.22 | -2.90 | 1.50 | n/a | n/a | |||
| PRDM9_HUMAN | 2.56 | -2.18 | 1.00 | n/a | n/a |
Items per page:
1 – 4 of 4
Motif analysis
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Hypothalamus, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood