rs28369918 chr1:171210531 C>G
- Sequence
acattaagcaacataatagacaaa[C/G]atctcctaagggaacatttgttac
- ASB in cell types
- LNCaP (prostate carcinoma) breast tumor 22RV1 (prostate carcinoma) hASC (derived adipocytes)
- ASB for transcription factors
- ANDR_HUMAN PPARG_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 1.66 | -0.09 | 1.55 | n/a | No Hit | |||
| PPARG_HUMAN | 2.42 | n/a | 2.75 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Substantia_nigra, Esophagus_Mucosa, Lung, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid