rs28372854 chr19:33081066 G>A
- Sequence
gaatccggagcgcaggctcgggcc[G/A]ctaggacaccttcccccgcccgcg
- ASB in cell types
- A549 (lung carcinoma) Kelly (neuroblastoma)
- ASB for transcription factors
- JUN_HUMAN CTCFL_HUMAN ERF_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | 1.09 | 0.21 | 1.98 | n/a | No Hit | |||
| CTCFL_HUMAN | 2.14 | -0.53 | 1.00 | n/a | No Hit | |||
| ERF_HUMAN | 2.74 | n/a | 1.00 | n/a | n/a | |||
| CTCF_HUMAN | 0.91 | 0.46 | 1.23 | n/a | No Hit | |||
| SIN3A_HUMAN | 1.31 | n/a | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood