rs28377352 chr15:89751058 T>G
- Sequence
ggcgcgggggtcccggagggtgcc[T/G]ggccgcgcggggctcgccacgggg
- ASB in cell types
- SUM159PT (Triple negative breast cancer) foreskin keratinocyte SK-MEL-147 (melanoma) Kelly (neuroblastoma)
- ASB for transcription factors
- CTCF_HUMAN BRD2_HUMAN STAG1_HUMAN MYCN_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.30 | 0.64 | 1.20 | n/a | No Hit | |||
| BRD2_HUMAN | 2.87 | -2.55 | 1.00 | n/a | n/a | |||
| STAG1_HUMAN | 1.30 | -0.33 | 1.00 | n/a | n/a | |||
| MYCN_HUMAN | 2.27 | n/a | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Caudate_basal_ganglia, Breast_Mammary_Tissue, Esophagus_Mucosa, Muscle_Skeletal, Testis, Thyroid