rs2839368 chr21:46635465 A>G
- Sequence
gagaacctggcctcgcctcgcaag[A/G]ccgcgggacgcgcagatgtgaagt
- ASB in cell types
- SUM159PT (Triple negative breast cancer) CD14+ monocytes WA09 (embryonic stem cells) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- STAT1_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 2.01 | n/a | 3.00 | n/a | No Hit | |||
| ANDR_HUMAN | 1.83 | -3.38 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Brain_Frontal_Cortex_BA9, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid