rs284574 chr2:216498338 A>G

Sequence
gctggcctgcaacttgttctggga[A/G]tggaaccttggattttagtcacca
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
ZN687_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZN687_HUMAN 2.33 -2.17 0.041.00 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP ldl cholesterol change with statins,  salmonella-induced pyroptosis
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Brain_Cortex,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Lung,  Minor_Salivary_Gland,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Testis,  Thyroid,  Whole_Blood

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