rs28458326 chr10:30726901 G>T
- Sequence
gggactggccagggaaggaaatac[G/T]gaagcgacaaaggagatacctttg
- ASB in cell types
- LNCaP (prostate carcinoma) bipolar neuron GM12878 (female B-cells lymphoblastoid cell line) hepatocytes
- ASB for transcription factors
- CTCF_HUMAN IKZF2_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.99 | 0.11 | 1.74 | n/a | No Hit | |||
| IKZF2_HUMAN | 2.83 | -2.70 | 1.00 | n/a | n/a | |||
| STAG1_HUMAN | -0.58 | 2.77 | 3.00 | n/a | n/a |
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