rs28474963 chr15:65757405 T>G

Sequence
tccggcttgtgttttagaaggcat[T/G]aaaagcatgggagataagcacttc
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
IKZF1_HUMAN MTG16_HUMAN HTF4_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
IKZF1_HUMAN -2.15 2.51 1.006.6·10-4 2.00 n/a No Hit
MTG16_HUMAN n/a 1.52 1.008.7·10-3 2.00 n/a n/a
HTF4_HUMAN -2.06 2.84 1.000.02 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adrenal_Gland,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Brain_Putamen_basal_ganglia,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Mucosa,  Muscle_Skeletal,  Testis,  Thyroid,  Whole_Blood

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