rs28494003 chr16:2905340 A>T
- Sequence
cgtcacaggaaaacagcaaccagg[A/T]ccccgcggctcctggcgcttggac
- ASB in cell types
- HEK293 (embryonic kidney) A549 (lung carcinoma) HepG2 (hepatoblastoma) CD14+ monocytes
- ASB for transcription factors
- PRD10_HUMAN STAT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PRD10_HUMAN | 1.74 | n/a | 2.00 | n/a | n/a | |||
| STAT1_HUMAN | 1.92 | n/a | 2.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Lung, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood