rs28532037 chr12:123398859 G>A
- Sequence
aggctgtggatccaggagggtggg[G/A]cataatacagcctgttgttggcca
- ASB in cell types
- 22RV1 (prostate carcinoma) HUDEP-2 (Human Umbilical Cord Blood-Derived Erythroid Progenitor Cells-2)
- ASB for transcription factors
- ANDR_HUMAN BC11A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | -5.49 | 3.16 | 2.00 | n/a | No Hit | |||
| BC11A_HUMAN | 1.97 | -1.73 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Nerve_Tibial, Pancreas, Pituitary, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood