rs28544962 chr5:40781085 T>C

Sequence
gcaactatctttcatacaaccgaa[T/C]gtgcactaatttctaccccaggtg
ASB for transcription factors
CTCF_HUMAN
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View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 2.04 -1.84 0.051.00 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP ptger4 gene expression in lymphoblastoid cell lines
GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Esophagus_Mucosa,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach

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