rs2854707 chr9:101433333 G>A

Sequence
ctcaaccagaataacagtgaaaat[G/A]ataattcaaactaatactgtttac
ASB in cell types
HepG2 (hepatoblastoma)
ASB for transcription factors
FOXA2_HUMAN P66A_HUMAN ZN652_HUMAN TEAD1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA2_HUMAN 2.05 -3.13 2.0·10-41.00 1.50 n/a No Hit
P66A_HUMAN 3.24 -3.04 7.8·10-41.00 1.00 n/a n/a
ZN652_HUMAN 2.20 -1.93 3.4·10-31.00 1.00 n/a n/a
TEAD1_HUMAN 2.67 -2.54 0.011.00 1.00 n/a No Hit
MIXL1_HUMAN 2.65 n/a 0.011.00 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP hdl cholesterol change with statins
GTEx eQTL Artery_Aorta,  Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Spleen,  Testis,  Thyroid

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