rs285761 chr15:92638874 A>G

Sequence
cctgccacggggcactgtctacac[A/G]tgacctccaggcacacaggcccct
ASB in cell types
MCF7 (Invasive ductal breast carcinoma)
ASB for transcription factors
CLOCK_HUMAN ZN507_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CLOCK_HUMAN -2.02 2.44 1.006.9·10-4 1.00 3.06 Concordant
ZN507_HUMAN n/a 2.84 1.000.01 1.00 n/a n/a
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Motif analysis

CLOCK_HUMAN Concordant
CLOCK_HUMAN pic

Genetic associations

GRASP college completion,  cystatin c in serum,  triglycerides,  waist hip ratio
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Left_Ventricle,  Muscle_Skeletal,  Nerve_Tibial,  Ovary,  Thyroid

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