rs2862842 chr2:70293983 G>A
- Sequence
ctttttgagacggagtctagctct[G/A]tcgcccaggctggagtgcagtggc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) HEK293 (embryonic kidney) HepG2 (hepatoblastoma)
- ASB for transcription factors
- ZBTB6_HUMAN ESR1_HUMAN RBM25_HUMAN SIN3A_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZBTB6_HUMAN | -2.58 | 2.97 | 1.00 | 3.35 | Concordant | |||
| ESR1_HUMAN | 1.19 | -0.30 | 1.25 | n/a | No Hit | |||
| RBM25_HUMAN | -0.30 | 1.80 | 2.00 | n/a | n/a | |||
| SIN3A_HUMAN | 1.96 | -1.33 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Coronary, Artery_Tibial, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg