rs28645590 chr7:158829739 G>A
- Sequence
tgtgtctcggctggcgggagccgg[G/A]gacgggaaaggagagtgctcggtg
- ASB in cell types
- MDM(monocyte derived macrophages) MV-4-11 (Childhood acute monocytic leukemia) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- BRD4_HUMAN TF65_HUMAN ANDR_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BRD4_HUMAN | 1.19 | -0.26 | 1.40 | n/a | n/a | |||
| TF65_HUMAN | 2.41 | n/a | 2.00 | n/a | No Hit | |||
| ANDR_HUMAN | 1.80 | n/a | 4.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Spinal_cord_cervical_c-1, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Muscularis, Nerve_Tibial, Pancreas, Pituitary, Stomach, Testis, Thyroid, Whole_Blood