rs28651112 chr1:1909234 G>A
- Sequence
cgggcgtcaaggcgggccgtgggg[G/A]gggggggggaagtgacggggcgtg
- ASB in cell types
- glioblastoma cells GM18951 (B-cells Lymphoblastoid Cell Lines) erythroid cells LNCaP (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN SP1_HUMAN AHR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.62 | 1.74 | 1.52 | n/a | No Hit | |||
| STAG1_HUMAN | 0.25 | 1.14 | 1.20 | n/a | n/a | |||
| SP1_HUMAN | -0.74 | 1.71 | 1.62 | -1.84 | Weak Discordant | |||
| AHR_HUMAN | -0.31 | 1.55 | 1.00 | n/a | No Hit |
Items per page:
1 – 4 of 4
Motif analysis
