rs28693921 chr19:10231337 G>T
- Sequence
cggggctgggacgagggacagagg[G/T]gggggcggagagccgccgcctctg
- ASB in cell types
- 22RV1 (prostate carcinoma) HL-60 (acute myeloid leukemia) breast tumor
- ASB for transcription factors
- INT13_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| INT13_HUMAN | -0.40 | 2.40 | 1.00 | n/a | n/a | |||
| ANDR_HUMAN | 2.45 | -0.12 | 1.83 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Liver, Lung, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood