rs28698582 chr17:81512599 G>A
- Sequence
cccggcgcccccccagccccgtcc[G/A]cctgacccggcccaccccgccttt
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma) 22RV1 (prostate carcinoma) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- VEZF1_HUMAN TYY1_HUMAN ANDR_HUMAN ZBT26_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| VEZF1_HUMAN | -1.94 | 3.07 | 2.00 | -0.16 | Weak Discordant | |||
| TYY1_HUMAN | 1.42 | -0.64 | 2.00 | n/a | No Hit | |||
| ANDR_HUMAN | 2.14 | -4.75 | 2.33 | n/a | No Hit | |||
| ZBT26_HUMAN | -2.65 | 1.68 | 1.50 | n/a | n/a |
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Motif analysis
