rs28756677 chr9:137240764 T>C
- Sequence
ccagagagggcgcaactctggacg[T/C]ggggccgccaccgagcctgccctt
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) GM02255 (Lymphoblastoid Cell Lines) GM02630 (Fanconi anemi) GM19099 (female B-cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN GCR_HUMAN BRD2_HUMAN FOXK2_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.62 | 0.57 | 1.19 | n/a | No Hit | |||
| GCR_HUMAN | 0.92 | 0.42 | 1.00 | n/a | No Hit | |||
| BRD2_HUMAN | -0.03 | 1.07 | 2.00 | n/a | n/a | |||
| FOXK2_HUMAN | 2.06 | n/a | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Esophagus_Mucosa, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood