rs288459 chr11:31022258 T>C

Sequence
tcttcctagtttctggtggtttcc[T/C]gccaactcttggtgtttattgact
ASB in cell types
LNCaP (prostate carcinoma) breast tumor xenograft
ASB for transcription factors
FOXA1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 2.35 0.02 4.5·10-101.00 1.59 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP chronic kidney disease,  serum creatinine
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Breast_Mammary_Tissue,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Muscle_Skeletal,  Ovary,  Skin_Not_Sun_Exposed_Suprapubic,  Testis,  Thyroid

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