rs291241 chr11:86302319 A>G
- Sequence
ggcattcttgccgctggcccagtc[A/G]ctatgtagtggaggggcagacacc
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) HCT-116 (colon carcinoma) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- RFOX2_HUMAN ANDR_HUMAN TF65_HUMAN ETV1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RFOX2_HUMAN | -1.25 | 2.70 | 2.00 | n/a | n/a | |||
| ANDR_HUMAN | 1.95 | -0.88 | 2.00 | n/a | No Hit | |||
| TF65_HUMAN | 1.81 | -1.50 | 2.25 | n/a | No Hit | |||
| ETV1_HUMAN | -1.98 | 2.78 | 2.00 | n/a | No Hit | |||
| ESR1_HUMAN | 1.51 | 0.03 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP asthma, chronic kidney disease, ldl cholesterol change with statins, microalbuminuria, partial epilepsy, total cholesterol