rs2920908 chr1:211416443 G>A
- Sequence
ccgctccctccgtgggccgcgggc[G/A]aggcaggagcgcgggctccccctg
- ASB in cell types
- GM19239 (male B-cells lymphoblastoid cell line) CUTLL1 (T-cell lymphoblastic lymphoma 1) SEM (childhood B acute lymphoblastic leukemia) 2588 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN PTEN_HUMAN ZFX_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.48 | 0.93 | 1.22 | n/a | No Hit | |||
| STAG1_HUMAN | 2.98 | n/a | 1.00 | n/a | n/a | |||
| PTEN_HUMAN | 2.63 | -4.03 | 1.33 | n/a | n/a | |||
| ZFX_HUMAN | -1.51 | 2.43 | 1.00 | n/a | No Hit | |||
| KMT2A_HUMAN | 2.21 | -0.64 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Minor_Salivary_Gland, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Testis, Thyroid