rs292332 chr18:5073443 G>T
- Sequence
tgatattgtgtcatttcagaacac[G/T]gtcaccaggtgacagcattgcact
- ASB in cell types
- esophagus squamous epithelium THP-1 (acute monocytic leukemia) spleen IMR-5 (Neuroblastoma)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN GATA2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.18 | 0.66 | 1.43 | -1.54 | Weak Concordant | |||
| RAD21_HUMAN | 1.18 | 0.37 | 1.16 | n/a | n/a | |||
| GATA2_HUMAN | 2.17 | n/a | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP adiponectin levels, aortic valve calcium, resistance to kuru in aged women despite likely exposure