rs292507 chr7:135170740 G>A

Sequence
gcctcttccggccccgcgcgctcc[G/A]gggtcccgcgggctcccggcctcg
ASB in cell types
K562 (myelogenous leukemia) HepG2 (hepatoblastoma) A549 (lung carcinoma) Peyer's patch
ASB for transcription factors
HDAC1_HUMAN ZBT11_HUMAN GABPA_HUMAN IKZF1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
HDAC1_HUMAN 0.26 1.66 1.006.4·10-4 1.30 n/a n/a
ZBT11_HUMAN -3.28 2.06 1.001.0·10-3 1.75 n/a n/a
GABPA_HUMAN -0.06 1.02 1.008.3·10-3 1.44 n/a No Hit
IKZF1_HUMAN -0.78 1.03 1.000.02 1.29 n/a No Hit
ZNF24_HUMAN -0.01 1.33 1.000.03 1.36 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Brain_Cortex,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Kidney_Cortex,  Liver,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Pituitary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Spleen,  Stomach,  Testis,  Thyroid,  Vagina,  Whole_Blood

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