rs292557 chr7:135187023 C>T

Sequence
acatgtcagcatgtaatttccctc[C/T]gagtcaaaagcgaagagtcggccc
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line) MS-1 (Small cell lung carcinoma)
ASB for transcription factors
CTCF_HUMAN JUNB_HUMAN MEF2B_HUMAN SKIL_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN -0.38 2.08 1.001.5·10-9 1.05 n/a No Hit
JUNB_HUMAN -3.55 3.79 1.001.1·10-7 1.00 4.69 Concordant
MEF2B_HUMAN n/a 0.81 1.006.8·10-7 1.50 n/a No Hit
SKIL_HUMAN -2.26 2.52 1.009.1·10-6 1.00 n/a n/a
COT1_HUMAN -1.53 1.53 1.004.0·10-4 1.00 n/a No Hit
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Motif analysis

JUNB_HUMAN Concordant
JUNB_HUMAN pic

Genetic associations

GRASP diastolic blood pressure (dbp),  fasting blood glucose,  systolic blood pressure (sbp),  triglycerides
GTEx eQTL Adipose_Subcutaneous,  Adrenal_Gland,  Esophagus_Mucosa,  Liver,  Lung,  Muscle_Skeletal,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Testis,  Thyroid

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