rs295333 chr6:159169344 A>G
- Sequence
ccggccctggccccggccccgcac[A/G]ccggcagggggcgcccgagcgcag
- ASB in cell types
- 2588 (Lymphoblastoid Cell Lines) K562 (myelogenous leukemia) pancreas Kelly (neuroblastoma)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.70 | 1.68 | 1.28 | 1.28 | Weak Concordant | |||
| STAG1_HUMAN | -0.82 | 1.79 | 1.27 | n/a | n/a |
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Motif analysis
