rs2955626 chr17:714860 C>G
- Sequence
tgtcagccgctccggcacttccgg[C/G]aggccagggcacttccgggaccgg
- ASB in cell types
- CD14+ monocytes neutrophils from periferal blood MOLT-4 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- TYY1_HUMAN ELF1_HUMAN STAT1_HUMAN RAD21_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TYY1_HUMAN | 1.30 | 0.13 | 1.36 | n/a | No Hit | |||
| ELF1_HUMAN | -0.06 | 1.25 | 1.57 | 1.88 | Weak Concordant | |||
| STAT1_HUMAN | -0.33 | 1.51 | 1.80 | 4.35 | Concordant | |||
| RAD21_HUMAN | -0.02 | 1.82 | 1.31 | n/a | n/a | |||
| SPT5H_HUMAN | 1.49 | 0.07 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, height, obesity with early age of onset (age >2), parkinsons disease, triglycerides
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cortex, Colon_Transverse, Heart_Atrial_Appendage, Muscle_Skeletal, Nerve_Tibial, Pancreas, Prostate, Small_Intestine_Terminal_Ileum, Stomach, Testis, Thyroid, Whole_Blood