rs295696 chr5:74395363 A>G
- Sequence
gaaaatatacagctgctgctgacc[A/G]caaacccatccccccagctgcccg
- ASB in cell types
- GM12892 (female B-cells lymphoblastoid cell line) MS-1 (Small cell lung carcinoma) GM18505 (female B-cells Lymphoblastoid Cell Lines) GM19240 (B cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN RUNX3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.22 | 0.54 | 1.31 | n/a | No Hit | |||
| STAG1_HUMAN | 1.24 | 0.20 | 1.14 | n/a | n/a | |||
| RUNX3_HUMAN | 2.56 | n/a | 1.00 | -1.66 | Weak Concordant |
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Motif analysis
