rs2963967 chr5:32331350 A>G
- Sequence
ggccaggcgtgcctccctgctggg[A/G]tactggatctttgcttaaagtgca
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) breast tumor
- ASB for transcription factors
- GRHL2_HUMAN FOXA1_HUMAN SMCE1_HUMAN REQU_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GRHL2_HUMAN | 1.85 | 0.18 | 2.69 | n/a | No Hit | |||
| FOXA1_HUMAN | 1.14 | 0.25 | 2.41 | n/a | No Hit | |||
| SMCE1_HUMAN | 2.73 | n/a | 2.00 | n/a | n/a | |||
| REQU_HUMAN | 3.20 | n/a | 2.00 | n/a | n/a | |||
| ESR1_HUMAN | 1.20 | 0.28 | 2.68 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Esophagus_Mucosa, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood