rs297185 chr5:17189502 C>A
- Sequence
ttggctagtggacgcatcaccccc[C/A]tctctccctctgtcgtcccaccgc
- ASB in cell types
- THP-1 (acute monocytic leukemia) gastroesophageal sphincter GM19099 (female B-cells Lymphoblastoid Cell Lines) PC9 (lung adenocarcinoma)
- ASB for transcription factors
- RAD21_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 0.75 | 2.19 | 1.80 | n/a | n/a | |||
| STAG1_HUMAN | 2.13 | 0.65 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, ldl cholesterol