rs298253 chr2:156464828 C>G

Sequence
catataatgcagttgcaacaggaa[C/G]ttttgaaagaattggtacattttc
ASB in cell types
U937 (adult acute monocytic leukemia)
ASB for transcription factors
CEBPA_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CEBPA_HUMAN -1.20 2.52 1.001.4·10-3 1.67 0.90 Weak Concordant
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Motif analysis

CEBPA_HUMAN Weak Concordant
CEBPA_HUMAN pic

Genetic associations

GRASP ldl cholesterol change with statins,  myopia,  total cholesterol change with statins
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Coronary,  Artery_Tibial,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Lung,  Nerve_Tibial,  Thyroid,  Whole_Blood

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