rs2994562 chr1:56332125 A>G
- Sequence
gaatcacaaagcagtggacttaca[A/G]tgccttccaagcaatcaggtttaa
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) SMMC-7721 (hepatocellular carcinoma)
- ASB for transcription factors
- COT1_HUMAN IKZF2_HUMAN STAT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| COT1_HUMAN | -2.34 | 2.29 | 1.00 | n/a | No Hit | |||
| IKZF2_HUMAN | -0.55 | 1.40 | 1.00 | n/a | n/a | |||
| STAT1_HUMAN | -1.85 | 2.15 | 1.00 | -0.50 | Weak Discordant |
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Motif analysis
