rs2997922 chr9:128818465 C>T
- Sequence
gcgacgatgccacgcccctcatac[C/T]ggcgtcttaaatgcgcaaagaaag
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) erythroid cells Th1-cells HeLa-LTR-Luciferase cells
- ASB for transcription factors
- RBBP5_HUMAN TBX21_HUMAN BRD4_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RBBP5_HUMAN | n/a | 3.08 | 3.00 | n/a | n/a | |||
| TBX21_HUMAN | -0.28 | 1.84 | 1.00 | n/a | No Hit | |||
| BRD4_HUMAN | 0.03 | 1.04 | 1.64 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP body mass index (bmi), hdl cholesterol, hypertension (early onset hypertension), maternal transmission distortion, paternal transmission distortion, transmission distortion
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood