rs300152 chr2:17805416 G>T
- Sequence
agagcaccactttcagttctcttt[G/T]ctaactcaaggacacaggaaaatg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) EOL-1 (Acute myeloid leukemia)
- ASB for transcription factors
- IKZF1_HUMAN SPI1_HUMAN RELB_HUMAN TBX21_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF1_HUMAN | -1.39 | 1.93 | 2.50 | n/a | No Hit | |||
| SPI1_HUMAN | -1.04 | 2.15 | 1.60 | 2.74 | Concordant | |||
| RELB_HUMAN | -1.69 | 2.04 | 1.00 | n/a | No Hit | |||
| TBX21_HUMAN | -3.64 | 1.98 | 1.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP adiponectin levels, advanced age-related macular degeneration, fasting insulin, height, homa-b, homa-ir
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Esophagus_Mucosa, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid