rs3007429 chr1:6491632 C>T
- Sequence
aataggtgattgcctctcccatta[C/T]tcacatcctgcccgtcccttctcc
- ASB in cell types
- BEAS-2B (bronchial epithelium) MDA231-LM2-4175 (breast adenocarcinoma)
- ASB for transcription factors
- GCR_HUMAN JUN_HUMAN E2F1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 2.25 | -0.44 | 1.20 | n/a | No Hit | |||
| JUN_HUMAN | 1.68 | -0.40 | 1.57 | -4.48 | Concordant | |||
| E2F1_HUMAN | 2.42 | -2.26 | 1.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Esophagus_Mucosa, Testis, Whole_Blood