rs3011225 chr1:43853701 G>A

Sequence
ttgagatgcattttgttttaggaa[G/A]gctggggtgtgtggtgtgtatctg
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Cell type
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
GM12878 (female B-cells lymphoblastoid cell line) 0.85 0.46 0.040.77 1.06
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Motif analysis

No data available

Genetic associations

EMBL-EBI amyotrophic lateral sclerosis (age of onset)
GRASP amyotrophic lateral sclerosis (als) age of onset,  fasting blood glucose,  hypertension (early onset hypertension),  refractive error,  rheumatoid arthritis
GTEx eQTL Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Brain_Hippocampus,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Lung,  Muscle_Skeletal,  Spleen,  Testis,  Thyroid,  Whole_Blood

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