rs30156 chr5:157219995 C>T
- Sequence
tggaatcattgttctagtttcaac[C/T]gcatgtctaaatccaatgcaacgg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) Th1-cells
- ASB for transcription factors
- IKZF2_HUMAN RUNX3_HUMAN MYB_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF2_HUMAN | 1.58 | -0.35 | 1.00 | n/a | n/a | |||
| RUNX3_HUMAN | 2.95 | -4.89 | 1.50 | -4.44 | Concordant | |||
| MYB_HUMAN | 3.11 | n/a | 3.00 | 2.41 | Discordant |
Items per page:
1 – 3 of 3
Motif analysis
