rs301792 chr1:8408218 A>G
- Sequence
cctcctcagccattaaaaaaaggg[A/G]gggtgggggaagggctagcaaaat
- ASB in cell types
- 22RV1 (prostate carcinoma) HCC70 (ductal breast carcinoma) hASC (derived adipocytes)
- ASB for transcription factors
- STAT3_HUMAN ANDR_HUMAN PPARG_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT3_HUMAN | 2.89 | n/a | 1.50 | n/a | No Hit | |||
| ANDR_HUMAN | 3.08 | -0.26 | 1.50 | n/a | No Hit | |||
| PPARG_HUMAN | 3.00 | 0.29 | 1.20 | 2.56 | Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid, Whole_Blood