rs30381 chr5:179870871 G>A

Sequence
ctggctcaactgttgtgacgctag[G/A]gccacagcgcagcagccaccttga
ASB in cell types
PANC1 (pancreatic ductal adenocarcinoma) HCT-116 (colon carcinoma) bipolar neuron
ASB for transcription factors
CTCF_HUMAN RAD21_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 2.54 -0.92 1.1·10-61.00 1.47 n/a No Hit
RAD21_HUMAN 2.68 -0.14 2.9·10-30.83 1.25 n/a n/a
Items per page:
1 – 2 of 2

Motif analysis

No data available

Genetic associations

GTEx eQTL Artery_Tibial Brain_Amygdala Brain_Hypothalamus Cells_Cultured_fibroblasts Esophagus_Muscularis Muscle_Skeletal Nerve_Tibial Skin_Not_Sun_Exposed_Suprapubic Skin_Sun_Exposed_Lower_leg Testis Thyroid Whole_Blood

Download