ADASTRA v5.1.3
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rs30381
chr5:179870871
G
>
A
Sequence
ctggctcaactgttgtgacgctag[G/A]gccacagcgcagcagccaccttga
ASB in cell types
PANC1 (pancreatic ductal adenocarcinoma)
HCT-116 (colon carcinoma)
bipolar neuron
ASB for transcription factors
CTCF_HUMAN
RAD21_HUMAN
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View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
G
) ASB
-log10 FDR of Alt (
A
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN
2.54
-0.92
1.1·10
-6
1.00
1.47
n/a
No Hit
RAD21_HUMAN
2.68
-0.14
2.9·10
-3
0.83
1.25
n/a
n/a
Items per page:
5
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GTEx eQTL
Artery_Tibial
,
Brain_Amygdala
,
Brain_Hypothalamus
,
Cells_Cultured_fibroblasts
,
Esophagus_Muscularis
,
Muscle_Skeletal
,
Nerve_Tibial
,
Skin_Not_Sun_Exposed_Suprapubic
,
Skin_Sun_Exposed_Lower_leg
,
Testis
,
Thyroid
,
Whole_Blood
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Generated by ADASTRA database
2022.05.19 v5.1.3 Bill Cipher
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)