rs30618 chr5:14272827 A>C
- Sequence
cgttatctcctttaggagggaaaa[A/C]aaccataaaattaagtagaaattg
- ASB in cell types
- K562 (myelogenous leukemia) LNCaP (prostate carcinoma) 22RV1 (prostate carcinoma) iPS-derived chondrocytes
- ASB for transcription factors
- FOXA1_HUMAN ATF7_HUMAN ARI1B_HUMAN TLE3_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 0.48 | 0.92 | 1.68 | n/a | No Hit | |||
| ATF7_HUMAN | 2.04 | -1.82 | 1.00 | n/a | n/a | |||
| ARI1B_HUMAN | 0.91 | -0.91 | 1.00 | n/a | n/a | |||
| TLE3_HUMAN | -0.12 | 1.48 | 1.50 | n/a | n/a |
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