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rs306789 chr9:121358991 A>C

Sequence
tgttgtgttcctattttctgtatc[A/C]agtgtcatcctcatttttagtttg
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line)
ASB for transcription factors
IKZF1_HUMAN IKZF2_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
IKZF1_HUMAN 2.76 -2.50 2.7·10-31.00 1.00 n/a No Hit
IKZF2_HUMAN 2.11 -1.61 0.041.00 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP mitral annular calcium
GTEx eQTL Adipose_Subcutaneous Adipose_Visceral_Omentum Adrenal_Gland Artery_Aorta Artery_Coronary Artery_Tibial Brain_Caudate_basal_ganglia Brain_Spinal_cord_cervical_c-1 Breast_Mammary_Tissue Colon_Sigmoid Esophagus_Gastroesophageal_Junction Esophagus_Muscularis Heart_Atrial_Appendage Heart_Left_Ventricle Lung Muscle_Skeletal Nerve_Tibial Pancreas Pituitary Prostate Skin_Sun_Exposed_Lower_leg Small_Intestine_Terminal_Ileum Spleen Thyroid Whole_Blood

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