rs3098948 chr17:29643504 C>T

Sequence
cagctcactgcaagctccacctcc[C/T]ggcttcatgccattctgctttagc
ASB in cell types
HEK293 (embryonic kidney) K562 (myelogenous leukemia) upper lobe of left lung
ASB for transcription factors
ZN335_HUMAN EP300_HUMAN PRD10_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZN335_HUMAN n/a 2.70 1.001.4·10-4 2.00 n/a No Hit
EP300_HUMAN 2.63 -4.96 0.021.00 2.00 n/a n/a
PRD10_HUMAN -4.63 2.11 1.000.05 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Artery_Tibial,  Brain_Anterior_cingulate_cortex_BA24,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Brain_Hypothalamus,  Brain_Nucleus_accumbens_basal_ganglia,  Brain_Putamen_basal_ganglia,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Lung,  Minor_Salivary_Gland,  Nerve_Tibial,  Pancreas,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Spleen,  Stomach,  Testis,  Thyroid,  Whole_Blood

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