rs3108297 chr4:185202643 C>G
- Sequence
ccacccctccggaagcacaaacca[C/G]aactatgcctttatctgcatttcc
- ASB in cell types
- HepG2 (hepatoblastoma) MOLT-4 (Adult T acute lymphoblastic leukemia) K562 (myelogenous leukemia) GM12891 (male B- cells lymphoblastoid cell line)
- ASB for transcription factors
- BCL6_HUMAN CDK9_HUMAN TEAD3_HUMAN ZNF24_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BCL6_HUMAN | 2.50 | n/a | 1.50 | n/a | No Hit | |||
| CDK9_HUMAN | 2.39 | -3.93 | 1.50 | n/a | n/a | |||
| TEAD3_HUMAN | 2.12 | -3.61 | 1.50 | n/a | n/a | |||
| ZNF24_HUMAN | 2.24 | -1.63 | 1.00 | n/a | n/a | |||
| ZGPAT_HUMAN | 2.82 | -2.71 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood