rs311225 chr6:107083496 T>G
- Sequence
acccccaaaaacaaaattacccag[T/G]tgtggtggtgcgtgcctgcagtcc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- PAX2_HUMAN IKZF2_HUMAN IKZF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PAX2_HUMAN | -4.55 | 2.70 | 1.50 | n/a | n/a | |||
| IKZF2_HUMAN | -2.63 | 2.70 | 1.00 | n/a | n/a | |||
| IKZF1_HUMAN | -2.92 | 2.57 | 1.25 | n/a | No Hit |
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