rs3120063 chr14:20454848 C>A
- Sequence
cgcggaactcccgcgagcggagac[C/A]cgccaaggcccctccagggacctg
- ASB in cell types
- MOLT-4 (Adult T acute lymphoblastic leukemia) MCF7 (Invasive ductal breast carcinoma) iPS-derived dermal fibroblasts adult erythroblasts
- ASB for transcription factors
- RARA_HUMAN SPT5H_HUMAN RBBP5_HUMAN BRD4_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RARA_HUMAN | 0.95 | 0.21 | 1.00 | n/a | No Hit | |||
| SPT5H_HUMAN | -3.02 | 1.57 | 2.00 | n/a | n/a | |||
| RBBP5_HUMAN | 2.46 | n/a | 2.00 | n/a | n/a | |||
| BRD4_HUMAN | 1.05 | 1.60 | 1.50 | n/a | n/a | |||
| CDK9_HUMAN | -1.96 | 1.90 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Hippocampus, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg