rs3121167 chr1:56332200 G>C
- Sequence
gcggggtgaaagaaagcgaggctg[G/C]gtcctgatgaatcccacacgcagc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- ARNT_HUMAN BACH1_HUMAN ZN687_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ARNT_HUMAN | -2.24 | 2.67 | 1.00 | n/a | No Hit | |||
| BACH1_HUMAN | -2.66 | 2.57 | 1.00 | -1.72 | Weak Discordant | |||
| ZN687_HUMAN | -1.67 | 2.06 | 1.00 | n/a | n/a |
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Motif analysis
