rs312181 chr19:46829947 G>A
- Sequence
ttaaataccaaggacttcctgaag[G/A]cactgagtgtccaggccaccgagt
- ASB in cell types
- pancreas foreskin keratinocyte BEAS-2B (bronchial epithelium)
- ASB for transcription factors
- GCR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 1.33 | 0.05 | 1.06 | -2.80 | Concordant |
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Motif analysis
Genetic associations
GRASP alzheimers disease, hdl cholesterol, late onset alzheimers disease, longstanding arthritis, partial epilepsy, rheumatoid arthritis
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Colon_Sigmoid, Colon_Transverse, Esophagus_Muscularis, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood