rs3134867 chr4:1684252 T>G
- Sequence
ggtacctgagcgcggccgcggggg[T/G]gcggagcgagaagactgccggccg
- ASB in cell types
- LNCaP C4-2B (prostate carcinoma) SUM159PT (Triple negative breast cancer) LNCaP (prostate carcinoma) GM19240 (B cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- TBP_HUMAN ZFX_HUMAN SMAD3_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TBP_HUMAN | 1.71 | 1.13 | 1.00 | n/a | No Hit | |||
| ZFX_HUMAN | 2.50 | -0.44 | 1.90 | n/a | No Hit | |||
| SMAD3_HUMAN | 2.10 | -1.03 | 1.00 | n/a | No Hit | |||
| CTCF_HUMAN | -0.22 | 2.20 | 1.21 | 5.56 | Concordant | |||
| GCR_HUMAN | 1.59 | -0.12 | 1.50 | n/a | No Hit |
Items per page:
1 – 5 of 6
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood